# API Reference

Complete API documentation for Abstracts Explorer.

## Core Modules

- [Database Module](database.md) — paper storage and retrieval (SQLite/PostgreSQL)
- [Embeddings Module](embeddings.md) — vector embeddings and semantic search
- [Clustering Module](clustering.md) — clustering algorithms and visualization
- [RAG Module](rag.md) — Retrieval-Augmented Generation chat
- [Config Module](config.md) — configuration management

## Plugin & Registry

- [Plugin Module](plugin.md) — plugin framework for conference downloaders
- [Registry Module](registry.md) — OCI registry upload/download of data artifacts

## MCP Integration

- [MCP Server Module](mcp_server.md) — Model Context Protocol server for cluster analysis
- [MCP Tools Module](mcp_tools.md) — MCP tools integration for RAG chat

## Utilities

- [Export Utilities](export_utils.md) — paper export (ZIP, Markdown)
- [Paper Utilities](paper_utils.md) — paper formatting helpers
- [Database Models](db_models.md) — SQLAlchemy ORM models
- [Evaluation Module](evaluation.md) — automatic RAG evaluation